China National GeneBank, BGI-Shenzhen, Shenzhen, ChinaShaohong Feng, Yuan Deng, Qi Fang, Duo Xie, Guangji Chen, Chunxue Guo, Zongji Wang, Wanjun Chen, Guanliang Meng, Qiye Li & Guojie ZhangState Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, ChinaShaohong Feng & Guojie ZhangBGI-Shenzhen, Shenzhen, ChinaShaohong Feng, Yuan Deng, Qi Fang, Duo Xie, Guangji Chen, Chunxue Guo, Zongji Wang, Wanjun Chen, Qiye Li, Huanming Yang & Jian WangVillum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, DenmarkJosefin Stiller, Yuan Deng, Qi Fang, Sergio Andreu-Sánchez & Guojie ZhangUC Santa Cruz Genomics Institute, UC Santa Cruz, Santa Cruz, CA, USAJoel Armstrong, Mark Diekhans, David Haussler & Benedict PatenNatural History Museum of Denmark, University of Copenhagen, Copenhagen, DenmarkAndrew Hart Reeve, Ângela M. Ribeiro, Jon Fjeldså, Peter A. Hosner & Knud Andreas JønssonBGI Education Center, University of Chinese Academy of Sciences, Shenzhen, ChinaDuo Xie & Guangji ChenDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA, USABrant C. Faircloth, Robb T. Brumfield, Subir B. Shakya & Frederick H. SheldonMuseum of Natural Science, Louisiana State University, Baton Rouge, LA, USABrant C. Faircloth, Robb T. Brumfield, Subir B. Shakya, Frederick H. Sheldon & Glaucia Del-RioCentre of Excellence for Omics-Driven Computational Biodiscovery (COMBio), Faculty of Applied Sciences, AIMST University, Kedah, MalaysiaBent Petersen & Thomas Sicheritz-PontenSection for Evolutionary Genomics, The GLOBE Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, DenmarkBent Petersen, Ashot Margaryan, George Pacheco, Mikkel-Holger S. Sinding, Lara Puetz, Emily Cavill, Thomas Sicheritz-Ponten & M. Thomas P. GilbertMOE Laboratory of Biosystems Homeostasis and Protection, Life Sciences Institute, Zhejiang University, Hangzhou, ChinaZongji Wang & Qi ZhouDepartment of Neuroscience and Developmental Biology, University of Vienna, Vienna, AustriaZongji Wang & Qi ZhouCenter for Reproductive Medicine, The 2nd Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, ChinaQi ZhouInstitute of Molecular Biology, National Academy of Sciences, Yerevan, ArmeniaAshot MargaryanNovogene, Durham, NC, USAJason Travis HowardDuke University Medical Center, Durham, NC, USACarole Parent & Erich D. JarvisDepartment of Dermatology, Medical University of Vienna, Vienna, AustriaLeopold EckhartCenter for Macroecology, Evolution, and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, DenmarkJon Fjeldså, Peter A. Hosner, Rute R. da Fonseca, Carsten Rahbek & Gary R. GravesSouthern Cross University, Coffs Harbour, New South Wales, AustraliaLes ChristidisCentre for Zoo and Wild Animal Health, Copenhagen Zoo, Frederiksberg, DenmarkMads F. BertelsenCenter of Natural History, Universität Hamburg, Hamburg, GermanyDieter Thomas TietzeDepartment of Zoology, University of Otago, Dunedin, New ZealandBruce C. Robertson & Ian G. JamiesonKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, ChinaGang Song & Fumin LeiEnvironmental Futures Research Institute, Griffith University, Nathan, Queensland, AustraliaGang SongDepartment of Biology, University of Maryland, College Park, MD, USAGerald BorgiaDepartment of Natural History, Royal Ontario Museum, Toronto, Ontario, CanadaSantiago Claramunt & Jason T. WeirDepartment of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, CanadaSantiago Claramunt & Jason T. WeirCornell Lab of Ornithology, Cornell University, Ithaca, NY, USAIrby J. Lovette & John W. FitzpatrickBiodiversity and Conservation Science, Department of Biodiversity Conservation and Attractions, Perth, Western Australia, AustraliaSaul J. CowenOrnithology Section, Zoology Department, National Museums of Kenya, Nairobi, KenyaPeter NjorogeOrnithology and Mammalogy, California Academy of Sciences, San Francisco, CA, USAJohn Philip DumbacherSan Diego Zoo Institute for Conservation Research, Escondido, CA, USAOliver A. RyderEvolution, Behavior, and Ecology, Division of Biology, University of California San Diego, La Jolla, CA, USAOliver A. RyderInstitut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, FranceJérôme FuchsTrace and Environmental DNA (TrEnD) Laboratory, School of Molecular and Life Sciences, Curtin University, Western Australia, Perth, AustraliaMichael BunceUQ Genomics, University of Queensland, Brisbane, Queensland, AustraliaDavid W. BurtDepartment of Ornithology, American Museum of Natural History, New York, NY, USAJoel CracraftIntegrative Research Center, Field Museum of Natural History, Chicago, IL, USAShannon J. HackettFitzPatrick Institute of African Ornithology, University of Cape Town, Cape Town, South AfricaPeter G. RyanDepartment of Biology, University of Florida, Gainesville, FL, USAEdward L. BraunDepartment of Biology, New Mexico State University, Las Cruces, NM, USAPeter HoudeDepartment of Electrical and Computer Engineering, University of California San Diego, La Jolla, CA, USASiavash MirarabDepartment of Ecology and Genetics – Evolutionary Biology, Evolutionary Biology Centre (EBC), Science for Life Laboratory, Uppsala University, Uppsala, SwedenAlexander SuhDepartment of Organismal Biology – Systematic Biology, Evolutionary Biology Centre (EBC), Science for Life Laboratory, Uppsala University, Uppsala, SwedenAlexander SuhSchool of Biological Sciences, University of East Anglia, Norwich, UKAlexander SuhDepartment of Biology, Lund University, Lund, SwedenBengt Hansson, Suvi Ponnikas, Hanna Sigeman & Martin StervanderInstitute of Ecology and Evolution, University of Oregon, Eugene, OR, USAMartin StervanderDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USAPaul B. FrandsenData Science Lab, Office of the Chief Information Officer, Smithsonian Institution, Washington, DC, USAPaul B. Frandsen & Rebecca B. DikowFocus Area for Human Metabolomics, North-West University, Potchefstroom, South AfricaHenriette van der Zwan & Rencia van der SluisDepartment of Animal Sciences, University of Pretoria, Pretoria, South AfricaCarina VisserDepartment of Biology, East Carolina University, Greenville, NC, USAChristopher N. Balakrishnan, Dustin J. Foote & Matthew I. M. LouderDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USAAndrew G. ClarkAvian Ecology Program, Archbold Biological Station, Venus, FL, USAReed BowmanDepartment of Biology, University of Rochester, Rochester, NY, USANancy ChenDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USAAlison Cloutier & Scott V. EdwardsMuseum of Comparative Zoology, Harvard University, Cambridge, MA, USAAlison Cloutier & Scott V. EdwardsInformatics Group, Harvard University, Cambridge, MA, USATimothy B. SacktonSylvan Heights Bird Park, Scotland Neck, NC, USADustin J. FooteGenPhySE, INRA, INPT, INP-ENVT, Université de Toulouse, Castanet-Tolosan, FranceAlain VignalLaboratório Nacional de Computação Científica, Petrópolis, BrazilAndré E. R. Soares, Nicholas Costa Barroso Lima & Ana Tereza Ribeiro VasconcelosDepartment of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA, USAAndré E. R. Soares & Beth ShapiroHoward Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA, USABeth ShapiroInstitut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, SpainJacob González-Solís, Joan Ferrer-Obiol, Julio Rozas & Marta RiutortDepartament de Biologia Evolutiva, Ecologia i Ciències Ambientals (BEECA), Universitat de Barcelona, Barcelona, SpainJacob González-SolísDepartament de Genètica, Microbiologia i Estadística, Universitat de Barcelona, Barcelona, SpainJoan Ferrer-Obiol, Julio Rozas & Marta RiutortDepartment of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USAAnna TiganoDepartment of Biology, Queen’s University, Kingston, Ontario, CanadaAnna Tigano & Vicki FriesenDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, SwedenLove Dalén & Nicolas DussexCentre for Palaeogenetics, Stockholm, SwedenLove Dalén & Nicolas DussexMilner Centre for Evolution, University of Bath, Bath, UKAraxi O. Urrutia & Tamás SzékelyInstituto de Ecologia, UNAM, Mexico City, MexicoAraxi O. UrrutiaState Key Laboratory of Biocontrol, School of Ecology, Sun Yat-sen University, Guangzhou, ChinaYang LiuCenter for Conservation Genomics, Smithsonian Conservation Biology Institute, Smithsonian Institution, Washington, DC, USAMichael G. Campana, Robert C. Fleischer & Haw Chuan LimNew York Genome Center, New York, NY, USAAndré CorveloDepartment of Anatomy, University of Otago, Dunedin, New ZealandKim M. Rutherford, Neil J. Gemmell & Nicolas DussexAG Neurosensory Sciences, Institut für Biologie und Umweltwissenschaften, University of Oldenburg, Oldenburg, GermanyHenrik Mouritsen & Nadine ThieleBiology Department, Texas A&M University, College Station, TX, USAKira DelmoreMPRG Behavioural Genomics, Max Planck Institute for Evolutionary Biology, Plön, GermanyKira Delmore & Miriam LiedvogelInstitute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, GermanyAndre Franke & Marc P. HoeppnerDepartment of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, GermanyOliver KroneEnvironmental Resilience Institute, Indiana University, Bloomington, IN, USAAdam M. FudickarNational Museum of Natural Sciences, Spanish National Research Council (CSIC), Madrid, SpainBorja MiláDepartment of Biology, Indiana University, Bloomington, IN, USAEllen D. KettersonInstitute of Marine Science, University of Auckland, Auckland, New ZealandAndrew Eric FidlerCenter for Genomics and Systems Biology, Department of Biology, New York University – Abu Dhabi, Abu Dhabi, UAEGuillermo FriisWildlife and Ecology Group, Massey University, Palmerston North, New ZealandÁngela M. Parody-Merino & Phil F. BattleySchool of Fundamental Sciences, Massey University, Palmerston North, New ZealandMurray P. CoxDepartamento de Bioquímica e Biologia Molecular, Centro de Ciências, Universidade Federal do Ceará, Fortaleza, BrazilNicholas Costa Barroso LimaLaboratório de Genômica e Biodiversidade, Instituto de Bioquímica Médica Leopoldo de Meis, Rio de Janeiro, BrazilFrancisco ProsdocimiDepartment of Biology, University of Nevada Reno, Reno, NV, USAThomas Lee ParchmanDepartment of Integrative Biology and Physiology, UCLA, Los Angeles, CA, USABarney A. SchlingerSmithsonian Tropical Research Institute, Panama City, PanamaBarney A. SchlingerDepartment of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, USABette A. Loiselle & John G. BlakeCenter for Latin American Studies, University of Florida, Gainesville, FL, USABette A. LoiselleDepartment of Biology, George Mason University, Fairfax, VA, USAHaw Chuan LimDepartment of Biology and Neuroscience Minor, University of Mississippi, University, MS, USALainy B. DayDepartment of Ecology and Evolutionary Biology, Brown University, Providence, RI, USAMatthew J. FuxjagerMax Planck Institute for Ornithology, Seewiesen, GermanyMaude W. BaldwinDepartment of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USAMichael J. Braun & Gary R. GravesBehavior, Ecology, Evolution and Systematics Program, University of Maryland, College Park, MD, USAMichael J. BraunComputational Biology Department, Carnegie Mellon University, Pittsburgh, PA, USAMorgan WirthlinMigratory Bird Center, Smithsonian National Zoological Park and Conservation Biology Institute, Washington, DC, USAT. Brandt RyderDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, SwitzerlandGlauco Camenisch & Lukas F. KellerBiology Department, Boston College, Chestnut Hill, MA, USAJeffrey M. DaCostaDepartment of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USAMark E. Hauber & Matthew I. M. LouderInternational Research Center for Neurointelligence, University of Tokyo, Tokyo, JapanMatthew I. M. LouderMuseum of Southwestern Biology, Department of Biology, University of New Mexico, Albuquerque, NM, USAChristopher C. WittMuseum of Vertebrate Zoology, Department of Integrative Biology, University of California, Berkeley, Berkeley, CA, USAJimmy A. McGuireNational Center for Genome Resources, Santa Fe, NM, USAJoann MudgeDepartment of Zoology and Physiology, University of Wyoming, Laramie, WY, USALibby C. Megna & Matthew D. CarlingSchool of BioSciences, The University of Melbourne, Melbourne, Victoria, AustraliaBiao WangDepartment of Ecology and Evolutionary Biology, University of Colorado Boulder, Boulder, CO, USAScott A. TaylorFinnish Museum of Natural History, University of Helsinki, Helsinki, FinlandAlexandre AleixoDepartment of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR, USAClaudio V. MelloDepartment of Biological Sciences, University of Toronto Scarborough, Toronto, Ontario, CanadaJason T. WeirJames D. Watson Institute of Genome Sciences, Hangzhou, ChinaHuanming YangCenter for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming, ChinaFumin Lei & Guojie ZhangDanish Institute for Advanced Study, University of Southern Denmark, Odense, DenmarkCarsten RahbekInstitute of Ecology, Peking University, Beijing, ChinaCarsten RahbekDepartment of Life Sciences, Imperial College London, Ascot, UKCarsten RahbekUniversity Museum, Norwegian University of Science and Technology, Trondheim, NorwayM. Thomas P. GilbertThe Rockefeller University, New York, NY, USAErich D. JarvisHoward Hughes Medical Institute, Chevy Chase, MD, USAErich D. JarvisC.R., M.T.P.G., G.R.G., F.L., E.D.J. and G.Z. initiated the B10K Project. S.F., J.S., Y.D., J.A., B. Paten and G.Z. conceived the current study. S.F., J.S., Y.D., A.H.R., G. Chen, C.G., J.T.H., G.P., E.C., J. Fjeldså, P.A.H., R.T.B., L.C., M.F.B., D.T.T., B.C.R., G.S., G.B., S.C., I.J.L., S.J.C., P.N., J.P.D., O.A.R., J. Fuchs, M.B., J.C., G.M., S.J.H., P.G.R., K.A.J., I.G.J., F.L., C.R., M.T.P.G., G.R.G., E.D.J. and G.Z. coordinated samples, including collection, shipping and permits. S.F., J.S., Y.D., Q.F., B.C.F., J.T.H., C.P., G.P., E.C., M.-H.S.S., Â.M.R., L.P., G.S., S.J.C., D.W.B., J.C., Q.L., H.Y., J.W., F.L., M.T.P.G., E.D.J. and G.Z. were involved in DNA extraction, sequencing or barcode confirmation. S.F., Y.D., B. Petersen, T.S.-P., Z.W. and Q.Z. performed the genome assemblies. S.F., J.S., Y.D., W.C., S.A.-S. and A.M. performed the mitochondrial genome assemblies and annotation. B.C.F., J.T.H., E.C., Â.M.R., R.T.B., D.T.T., I.J.L., A.S., M.S., P.B.F., B.H., H.S., S.P., H.v.d.Z., R.v.d.S., C.V., C.N.B., A.G.C., J.W.F., R.B., N.C., A. Cloutier, T.B.S., S.V.E., D.J.F., S.B.S., F.H.S., A.V., A.E.R.S., B.S., J.G.-S., J.F.-O., J.R., M.R., A.T., V.F., L.D., A.O.U., T.S., Y.L., M.G.C., A. Corvelo, R.C.F., K.M.R., N.J.G., N.D., H.M., N.T., K.D., M.L., A.F., M.P.H., O.K., A.M.F., B.M., E.D.K., A.E.F., G.F., Á.M.P.-M., P.F.B., M.P.C., N.C.B.L., F.P., T.L.P., B.A.S., B.A.L., J.G.B., H.C.L., L.B.D., M.J.F., M.W.B., M.J.B., M.W., R.B.D., T.B.R., G. Camenisch, L.F.K., J.M.D.C., M.E.H., M.I.M.L., C.C.W., J.A.M.G., J.M., L.C.M., M.D.C., B.W., S.A.T., G.D.-R., A.A., A.T.R.V., C.V.M., J.T.W., M.T.P.G. and E.D.J. supplied genome assemblies for additional species. S.F., J.S., Y.D., J.A., Q.F., D.X., G. Chen, B.C.F., L.E., D.W.B., R.R.d.F., E.L.B., P.H., S.M., A.S., D.H., M.T.P.G., E.D.J., B. Paten and G.Z. developed and improved annotation and orthologue identification pipelines, and analysed orthologues. S.F., J.S., Y.D., J.A., Q.F., D.X., B.C.F., M.D., D.H., B. Paten and G.Z. produced and analysed whole-genome alignments. J. Fjeldså illustrated the birds in Fig. 1. S.F., J.S., Y.D., J.A., Q.F., B. Paten and G.Z. wrote the manuscript, with input from all authors.
Source: http://feeds.nature.com/~r/nature/rss/current/~3/T66VmhY6Qxk/s41586-020-2873-9